Slovenia is generally assessed as a low-threat country for terrorism and terrorist activity. The National Security Council, chaired by the president and including the defense, interior, justice, foreign affairs, and finance ministers, is the main body for counterterrorism policy. In the case of a terrorist incident, the NSC's secretariat, led by the prime minister's national security advisor, would lead the inter-ministerial working group tasked with a response, with subgroups focusing on specific threats. In 2005, the MOI and Slovene Police developed a response plan for a terrorist attack using weapons of mass destruction. Slovenia's national policy also has plans in place to assess threat levels and specific guidelines on measures police officers are to take based on the corresponding threat level. According to the MOI, Slovenia's counterterrorism plans follow EU security standards.

The Government of Slovenia actively participated in multilateral terrorism efforts, including the Global Initiative to Combat Nuclear Terrorism. The U.S. Office for Defense Cooperation facilitated counterterrorism training for officials from various Slovene ministries, which included regional conferences and Marshall Center seminars. In fall 2009, Slovenia's Ministry of Defense announced that it would host a regional counterterrorism conference in March 2010. Slovenia contributed 81 troops to the International Security Assistance Force in Afghanistan, including 15 sent specifically for security during the August 2009 presidential elections.

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